Scaffold Ga0114975_10017007

Overview

Basic Information

• Taxon OID: 3300009164
• Scaffold ID: Ga0114975_10017007
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4441
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028809	Metagenome	190	N
F050365	Metagenome / Metatranscriptome	145	N
F076018	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114975_100170072	F028809	AGG	MEILNCQKPAGIESLRQNRIAIKAIERQTGLEFLSISDQEPSRIDGFIFDPFKGIITGIYEVKTRSYGLHKLQTTFGNEWMISWSKIQAALEVTRRTKLPFYGVLHLLDDNIVMMVEIFNRNASWAANHKVEDRLVNGAKDRMALIDMTTAMQYKMNQLF*
Ga0114975_100170074	F050365	N/A	MTQTEYVKHSGLTKGRVSQLTAAGMPLTSPEEADAWRGSRKGIGGRPSTLQRMAAIHQQEAVFNEAAQSITEGPYRPPEASVAVNASLVTLDTPAGAYERQKQIERASYGLAVQALRNKTMDAGRMVTVHASAAKNLINARQDVIALAEKERTMVSGSWVKKVMQDHDGAVAQLLKSMPKQLAGRIAPHDPEHAERELERWVQEVCLKTLHLTDPWK*
Ga0114975_100170075	F076018	N/A	MSLATDYLLLNIGHSTLKWHLDRIKSGSFTIDQVAMFYAPDPKKSVYKTVTRGLEELVKMKPENLPIQLR*