Basic Information | |
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Taxon OID | 3300009164 Open in IMG/M |
Scaffold ID | Ga0114975_10009128 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6223 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (75.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002977 | Metagenome / Metatranscriptome | 516 | Y |
F019762 | Metagenome / Metatranscriptome | 228 | Y |
F024559 | Metagenome / Metatranscriptome | 205 | Y |
F043407 | Metagenome / Metatranscriptome | 156 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114975_1000912815 | F002977 | GGAGG | MNAQLPAEGIMKTNDWGDSRVYRIACNCHDETHNHNMWVEADDHDIQVTIYTTGKTNWWSKTRWHHIWTLLTKGYIDTESSVHLTKQQALNYAETLKSAITDLEDFRNARQNKEERVTITKMANEQDCV* |
Ga0114975_100091283 | F043407 | N/A | MARTPPQAVVGINTHGLYGAVPPGMTVGGVLPVGQVYTTNTTAGKFLTSGSNGTNWTTGAITTPYDSVMVAKNNPPELEVKGRMVINGRDLEERLNTIEKVLQIPERDVILERKHPKLKKLYDEYITALGKYRTFEAIKGDENGTT* |
Ga0114975_100091284 | F019762 | N/A | MKMELHESVAHTRKETTVKESEGFRVRLVKHEVISPKGLFSLDIIQESLKDGEVADSQTYNFFMNKEELQSLAHGLTA* |
Ga0114975_100091286 | F024559 | GGAGG | MTCALIKLILGIALIFIVIVFGPIVGIWSLNTLFPVLQIPLTLETWCAFFLLFGSITGLRIGTNK* |
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