Scaffold Ga0114975

Basic Information
Taxon OID	3300009164 Open in IMG/M
Scaffold ID	Ga0114975_10005630 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009164 Open in IMG/M

Scaffold ID

Ga0114975_10005630 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8113
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (20.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

8113

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (20.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019119	Metagenome / Metatranscriptome	231	N
F032245	Metagenome / Metatranscriptome	180	Y
F037129	Metagenome / Metatranscriptome	168	Y
F077197	Metagenome / Metatranscriptome	117	N
F078606	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114975_1000563010	F019119	N/A	MEKKIMDEMLELSAAIAKEHYELTDTVDRNLNYLWYMYHKGSKVGTFRPFVYMAELQLLKRMGYINDTEIKNMIAMLESSDEENLHMVTLSIKSFRDLRVKENGEYSKVNPVYTKIAKDYPNEILNHEVFMQTMSPVN*
Ga0114975_1000563012	F037129	N/A	MSTRKKDYKVVEIDYGFITRYIVQKKFLWFFWKTIKNNAGYDMEYTTKRGAQAYINFLK*
Ga0114975_100056302	F078606	N/A	MISIRTKLFLIAALGSLVTWLIIKTLIVEVNVLEFLAIEFIVGFSHYIYNDVKLRHQE*
Ga0114975_100056303	F032245	N/A	MVMHEVFGKILQQKLTPNGVYVLFCIKDKIKCSDSINFNLEVLKLKSGNYLTESLELSDNTLKFIQEIEGYFKKSKKKTSKNLMGDDFLDNIKTYNECFPATKLPSGVYARVNVKSLENAFRWFFETFDYSWETVIQATEKYVEEYSINRYNYMRNSQYFVRKQNTDKTWDSTLATYCDMISQEDYEAPVFFKEKIV*
Ga0114975_100056308	F077197	AGAAGG	MFLPIEFRDEHGPYIEHLNVTHITRISFANPRNPDAGSKIHLRTGEILKSPMEFDQLSQAIDEAWESASYLILSTVLSEKAKLLRKDDLQTEEIEELDPLSEV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114975_10005630

Overview

Ecosystem & Geography

Associated Families

Sequences