Scaffold Ga0114975_10002042

Overview

Basic Information

• Taxon OID: 3300009164
• Scaffold ID: Ga0114975_10002042
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13945
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003038	Metagenome / Metatranscriptome	511	Y
F044374	Metagenome / Metatranscriptome	154	Y
F067648	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114975_100020422	F044374	GAG	MDKFRKAEISNPFFTLKTAFFQKGKYGRQVQLFEGELKRGEDIFIEFIDVNRDVNGKEIGIESAFEERPLFKYKSNPYFAEEYDVKEGTNSMGENYFAYTIPLSELMVLMPDGSEITYNLYEKRKAEAPKEQVSLSVFPDFENEFIPKLKENIGEVALHVTGQESASDILLRIAADFQKLAEKLK*
Ga0114975_100020424	F003038	N/A	MALSTTDLGTGGSGLPKTITPGNHVLKINSIELEDFKFIPGAYHLMMHVETQPIEGFEGFLIDKDDESKGRYEGQIGRVKASQYAFADGETKTGIKIQRDRSILIFLKTLAHTLELDSWFVEQDGKHDTIEDFVKAFNKTAEFRGKYLEFCVAGKEYEGKTGYTNYDMWLPKAEGKKYAFGSIESSSIIVFDETKHLKKLEVKEVKSFGDDDVFTKPKTSSDFSLD*
Ga0114975_100020429	F067648	N/A	MERDELKNLINMFQSSDAENHIVAFHAIENSILDDNELVLLYKFSGQPFTKWLHEIPMTARKITDVIGDEAIALSSARVLGIITNNKADKHIIETFLEFFIRDLTSMLGSIGYPMDKVDINVKIRDDGQSTES*