Basic Information | |
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Taxon OID | 3300009164 Open in IMG/M |
Scaffold ID | Ga0114975_10002042 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13945 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (22.22%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003038 | Metagenome / Metatranscriptome | 511 | Y |
F044374 | Metagenome / Metatranscriptome | 154 | Y |
F067648 | Metagenome / Metatranscriptome | 125 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114975_100020422 | F044374 | GAG | MDKFRKAEISNPFFTLKTAFFQKGKYGRQVQLFEGELKRGEDIFIEFIDVNRDVNGKEIGIESAFEERPLFKYKSNPYFAEEYDVKEGTNSMGENYFAYTIPLSELMVLMPDGSEITYNLYEKRKAEAPKEQVSLSVFPDFENEFIPKLKENIGEVALHVTGQESASDILLRIAADFQKLAEKLK* |
Ga0114975_100020424 | F003038 | N/A | MALSTTDLGTGGSGLPKTITPGNHVLKINSIELEDFKFIPGAYHLMMHVETQPIEGFEGFLIDKDDESKGRYEGQIGRVKASQYAFADGETKTGIKIQRDRSILIFLKTLAHTLELDSWFVEQDGKHDTIEDFVKAFNKTAEFRGKYLEFCVAGKEYEGKTGYTNYDMWLPKAEGKKYAFGSIESSSIIVFDETKHLKKLEVKEVKSFGDDDVFTKPKTSSDFSLD* |
Ga0114975_100020429 | F067648 | N/A | MERDELKNLINMFQSSDAENHIVAFHAIENSILDDNELVLLYKFSGQPFTKWLHEIPMTARKITDVIGDEAIALSSARVLGIITNNKADKHIIETFLEFFIRDLTSMLGSIGYPMDKVDINVKIRDDGQSTES* |
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