Basic Information | |
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Taxon OID | 3300009164 Open in IMG/M |
Scaffold ID | Ga0114975_10000077 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 62537 |
Total Scaffold Genes | 89 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 76 (85.39%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001629 | Metagenome | 660 | Y |
F030734 | Metagenome / Metatranscriptome | 184 | Y |
F059758 | Metagenome | 133 | N |
F059768 | Metagenome / Metatranscriptome | 133 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114975_1000007726 | F059758 | AGGAG | MALKITATNPTTGQATSTAYARITNFFGTKDQIQVQVAIHATEDARHGNMQTIREDAHYISVEDLKGDLIPAIYNVLKTFTQYAGAEDI* |
Ga0114975_1000007736 | F030734 | AGGAG | MGRATKMEDPNYQGERQPGAQRQDMSKGGPKQTSQRKAQAPSGSVAPRGVGQARNKQCKMY* |
Ga0114975_1000007765 | F001629 | AGGAGG | VNLNQGKVAGGLVEELLDLVHKYDESLYMATVIGCLELVKQQLINDAMENNDE* |
Ga0114975_1000007772 | F059768 | GAGG | MTFQEQIKAMPEADRIKFFRQIMAVVDAGRLSGVPPEEWAKMFADTYKSIEENT* |
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