Scaffold Ga0114975_10000077

Overview

Basic Information

• Taxon OID: 3300009164
• Scaffold ID: Ga0114975_10000077
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62537
• Total Scaffold Genes: 89
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (85.39%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001629	Metagenome	660	Y
F030734	Metagenome / Metatranscriptome	184	Y
F059758	Metagenome	133	N
F059768	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114975_1000007726	F059758	AGGAG	MALKITATNPTTGQATSTAYARITNFFGTKDQIQVQVAIHATEDARHGNMQTIREDAHYISVEDLKGDLIPAIYNVLKTFTQYAGAEDI*
Ga0114975_1000007736	F030734	AGGAG	MGRATKMEDPNYQGERQPGAQRQDMSKGGPKQTSQRKAQAPSGSVAPRGVGQARNKQCKMY*
Ga0114975_1000007765	F001629	AGGAGG	VNLNQGKVAGGLVEELLDLVHKYDESLYMATVIGCLELVKQQLINDAMENNDE*
Ga0114975_1000007772	F059768	GAGG	MTFQEQIKAMPEADRIKFFRQIMAVVDAGRLSGVPPEEWAKMFADTYKSIEENT*