Scaffold Ga0114970_10059613

Overview

Basic Information

• Taxon OID: 3300009163
• Scaffold ID: Ga0114970_10059613
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2439
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014489	Metagenome	262	N
F015570	Metagenome	253	Y
F024504	Metagenome	205	N
F032957	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114970_100596131	F032957	AGGAG	MDDFNPTTRMFPRSLREAYPKDYVNENIIEGPFYSAPNIHDIPVLFGLIAVLSMIAYAL
Ga0114970_100596134	F024504	AGGAG	MIRKTIGVEAPYRKSDYTYKDMLLDRIKDLEALVAKLEQRIKVLEAK*
Ga0114970_100596135	F015570	GAGG	MNDKLDEAFDELEFDDVTDQIRNSTYLAEQRKISTGVTDGSIQRALVRDLTENLRSLPVSNDPLLIRNDVLEEVAVELAKLPFGDTAASFAAFVRAMKS*
Ga0114970_100596138	F014489	AGGAG	MELKQQHISILKRLAHGASSMKRFTDKDTEVGNQGFHYLRYLNDLQNFGLALEIDEVWHITGFGVAKLAEQTPRVNKDRVAAGTTTETYDGADLKHGGNRVGASDFLKYPSKFGDNLVLPRVSL*