Scaffold Ga0114970_10040373

Overview

Basic Information

• Taxon OID: 3300009163
• Scaffold ID: Ga0114970_10040373
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3057
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007310	Metagenome	353	Y
F033795	Metagenome	176	Y
F071169	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114970_100403731	F071169	AGG	MSNIEVQVNLDELDIVRRKLSYQLNKDLTSEETIKFLIEREYNTAKKVSFTKKPHHDVAKSDIKEAIYNGFTS
Ga0114970_100403732	F007310	N/A	MRTVSWNNTEHWNNHHHYELLIKDITGFDLTQNLCSESVKYMAKRLSETKYQRRFKTLYTIYENEYNALVEKFNNQAYKNGKIEVSYEKEKVCGRA*
Ga0114970_100403739	F033795	N/A	IISLYKEVLMHDYHDADSWENMIWLMWSMAVNNKDTVWLFEAEKFVKRYLSLNPNGYRAYEYVGQFYRIMYVDLRLAVRYYESAIRWKDAPKSTHYSLISLFNKLNDKRMAIGYCKMTLAKFPNDEYATMRLKEINVR*