NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114970_10022104

Scaffold Ga0114970_10022104


Overview

Basic Information
Taxon OID3300009163 Open in IMG/M
Scaffold IDGa0114970_10022104 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4298
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013634Metagenome / Metatranscriptome269Y
F025485Metagenome / Metatranscriptome201Y
F031456Metagenome / Metatranscriptome182Y
F051709Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0114970_100221043F025485AGAAGMENVRKFLPLIIGGIVAIAFFFISRKVRQGSGNSQERSEILEKAREAKLAKSILKKSENEESSSNIES*
Ga0114970_100221045F013634N/AMSNCNRKSAMPIQLAPLVGAGLGALQQSKIDKALAGEKTYTKPKTIFGKLIGGVSGRSAAAEATQSVKTAPLSESVMNSLQPSSKTSNVPITGGFSFGGEATKRTYLPFYLGAVVLGIFFFMRRKGGRRRR*
Ga0114970_100221046F031456N/AMALIGSFAASSSAVFNLDFLPEYFLVGSCDEDTQALSNFSVVTSGTQLFSITNVDRLTALAKFDSGGLLSSAAVGETMVASYLKLATGRINKASTITGTNGVAAARNVFAASSNISNVARRAVEQSINPSANATFQNFECLIFEASTILRAQITFANGFTDEYTPTELNALYARYHVADRSGKVEAQTIIDADSGAGLISQVVLFNSNAGATVVLKTDYVQL*
Ga0114970_100221048F051709N/ALPIDFFFALFVKTNPKQMIPNRERLKIEVAIRPHIQAVEVINLELQKVNGSIERKWRQLDDFSSSWSYTMWQNWKDAMQGEISYREYLIIILEAYKK*
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