Scaffold Ga0114970

Basic Information
Taxon OID	3300009163 Open in IMG/M
Scaffold ID	Ga0114970_10017531 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009163 Open in IMG/M

Scaffold ID

Ga0114970_10017531 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4885
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4885

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (33.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TSB47	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TSB47

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014726	Metagenome / Metatranscriptome	260	Y
F014837	Metagenome / Metatranscriptome	259	Y
F016141	Metagenome / Metatranscriptome	249	Y
F024095	Metagenome / Metatranscriptome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114970_100175312	F014837	N/A	MIQRSINPKPRFVTLTSNPSTGALVGVPLATLFNAAFFRFPQDSIIHYVMVNSTLTCNGALSQAIGSVVYGQGNQTIGEVFSAGAPNFADGVLWRDELLNPAAGVISDSKSNQIVLNEFFVHTDTGIGIYVNGINASVNINATIAFNPIAEWINFREPTIGARI*
Ga0114970_100175313	F024095	GGCGG	MDNTNSLPFVYVVTSTLGAAVGATGSSTLIMQADSRFELMGIFGTGGLNATTETSQSYPNSFTVSIRDQTTGRDLMSAPVPQRVLCGNAFRQFLEKRGIIFEPQSNLLFTFTNLTADANVITLALHGYKIIL*
Ga0114970_100175314	F016141	AGGA	MTPEIIDSLQKRFGSADFSRYQVVRGQKYDFCRLLSAGTNSVSFFSNPIGATDPGAGATLFKTLEQTNLVKNASFGQEYFALTQIRTYANFVCQARQGFTTGTNFTYRGYTALTNGAMEQLQTVLNLGVLEISFAQKLYYQIARPFIACPSGFGIDVQSLASSRTGNAAETQVPGTNWSARSDYRASAVYNIDPIQIIEPEIQIQAAINFPNGNTPNFTNTALDTANGTQTPAIELGLIFDGYVIRPSQ*
Ga0114970_100175315	F014726	N/A	MGFQSESIISAASQKFGVIDYTRWQAIRWQWYSYITYPSAGATELNFFGQVAGQAGVTLQDTNLPKAGSFGQTHFQLKSISTDIQIASNDVDGFTRANQATLDTRALASDFLGGFVQAGVLRFSVGARPFATIIKPFQYAPPPGSPLDYDNSYVNQISAAPVPAAGAAQVVGVPWITQTKMRSNVYFVDPNILIEAEQQFNVSLQFPSGVVPVLATNVVNDSTNPLKVGVILDGLLLRPVQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114970_10017531

Overview

Ecosystem & Geography

Associated Families

Sequences