Scaffold Ga0114970_10006491

Overview

Basic Information

• Taxon OID: 3300009163
• Scaffold ID: Ga0114970_10006491
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8369
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (47.37%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F002044	Metagenome / Metatranscriptome	599	Y
F004599	Metagenome / Metatranscriptome	431	N
F007469	Metagenome / Metatranscriptome	350	Y
F020681	Metagenome / Metatranscriptome	222	Y
F043389	Metagenome / Metatranscriptome	156	N
F045061	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114970_1000649110	F002044	N/A	MANTRKPIKRKKINRRVVRQTPDPTKIDAHYIALHECYKAARKAGFSPEHAFWLMTEIKTFPNWVVGDGGIIPSIDPSDDEDDD*
Ga0114970_1000649112	F043389	AGG	MYAQIVCVYVGSDMIETTTPWLWLYCMLGIVIGWWAITKIMEQAFDRGFWSGRAAGWRAANEHYEKVRKLKSQSVFDYDKQN*
Ga0114970_1000649114	F004599	GGAG	MMAFNLADYEDVATLNKWFISNFPSGRSDISVISHDAVNGYILVQATLWRDSKDTSPAVSNIAFGSRESYIQNMKKFYVEDTATSALGRAIIILKGSDKTATKDDMKKVNDEPIKNIYGKSGNSQIIEMALRKSFADDGKPASEPTTWSVGDVAEALSTKPKQQECTHGLMILKEGTAKTGKPYYGYVCSAPKGEQCNAKWAVTAANGSWFFREEE*
Ga0114970_1000649115	F007469	N/A	MIDGSGLTAKFTDNGVKVEPSIIVCDACNDDRLLHEGDLLRCYSCHSINRIP*
Ga0114970_1000649116	F020681	N/A	VSIQQFRQFLKAQDGLVKVAKFRCNFCSANSEFIWMDGYKAADGFRVFQCLKCCAIGTKNLAEATDTQEPVIRCEQCGSWQFVDQQCHTCELIGAK*
Ga0114970_100064914	F000468	AGTAGG	MTAWSPDWKLTVAGVDYTDIAISDIQHQAGRTDIYQQPNPSYLQITFVTLTGQTLPFDINDSLILQVKDTSAAYVNLFGGDITDITVSVGATGSNATVIQYSVLAMGSLVKLAKELYLGTISQDEDGNQIYDLLSSVLLGTWNDVPAATTWAGYDATETWANALNLGLGEIDTPGLYTMENRAAETDTIYNIASLIANSAFGYLYEDNEGNIGYADADHRQNYLLTNGYVDLSANHALGQGLSTITRSGDIRNDVAINYGNNFGSQKTATSATSIATYGYKAESINSVLHSAVDAQAVADRYIAQRAFPLPAFQSITFPITNPEIDNSDRDNLLGVFMGQPLNLQNLPAQISGGEFEGYVEGWSWSTRFNELFLTINLSPVAYSQVAMRWNTTPIVETWQTIDPTLTWEYATIVA*
Ga0114970_100064916	F045061	N/A	MAITSKEINLEQLDKELGSQGLCADFNDPKKKLIVPADNSTVSEDELKTAIANHIAGPTQADVIKLNREQGLAKLKELGFTDDQIFALLNG*