Scaffold Ga0114970_10005435

Overview

Basic Information

• Taxon OID: 3300009163
• Scaffold ID: Ga0114970_10005435
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9184
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058087	Metagenome / Metatranscriptome	135	N
F071229	Metagenome / Metatranscriptome	122	Y
F093858	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114970_1000543512	F093858	AGGAG	MIDLNDPAAVCRSLGYFLDFLVMFVPPVALAFTAWRIAR*
Ga0114970_1000543517	F058087	AGG	MNARRIALLMVLLSFVFLGMAFLTSCVNVPIPPFGERVGELGNLQLALSAKYIPNTPPESPGETSHAFAWSKYGEAKLLKDK*
Ga0114970_100054359	F071229	GGAGG	MSDTTGIIGAGLILMSLYTTFQLGIECERERIRRERRRRFDEDQDNHDSANHDDFD*