Scaffold Ga0114970_10000814

Overview

Basic Information

• Taxon OID: 3300009163
• Scaffold ID: Ga0114970_10000814
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23606
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034904	Metagenome / Metatranscriptome	173	N
F036666	Metagenome / Metatranscriptome	169	N
F042808	Metagenome / Metatranscriptome	157	N
F054609	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114970_1000081411	F034904	N/A	MRKTLAQAKNSTIPQAVGLATCDERFVQLLNEAQARLADMGKWWGTYKKLRVCVTAGCITWPREVKTIEAMNLCGYNIPIQNQWYEFQTDTRAPRTGCGREGCEQDQLLDRGMVTQFRDSVGNCYIRVTPQLSADAGKRVLLQGLDPNGIPIRTLDSVTGEYVWGEYVTLPNPSITAYVRTSNRFKQPGLTGAQKPLTQGSLTIIAENDTTGLLTQVAVWGPSEQNPEYRRTYLVGMPEVCGGANSCSTTQDNCCIDNGDGCVPADETCTNTVVEAIVRLDFIPAIVDSDWLFIGNLQAIKHMMKAIQKEDRNQYTEAEREIQLALRSLRNELEAYSPNERSVINVQPFGSAKIQYRFGGFI*
Ga0114970_1000081414	F042808	N/A	MVAEKNRIVDGLLTAEGGVDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWTKLLTFDDPTVLYNGGYYNAAVQSAFKEGQFQGCGTYISDNGDPYIFASISGKVFKIDINNQFKVTDLSAIASQFVVFTRGRVANVATYMTGGAHGLFPGMVVRLPEVPGATSPAGFFGDFIVQNIPTFDSFTTYSPGTDAGPFLGPAFFGYLLSTNNPSTPHVYFQQAENWLIIQDQQNAPYLYDGTSLRRALSDEVPVGGPMAYGKGRLWVANGSEYYGGDLVYGDPAYGRDSVIRFTENTFLNEGGAFAVSNGPITGLAFAANLDTSLGDGDLLVFTPTATYAFNAPVDRDVWKDLSYPIQRFALLNFGSFNHESIVPVNGDLFFRAQDGIRSLIYARRDFTEFGNTPISRQVTRAIAYDTEFYLQAASSVNFDNRMLMTIQPQKVNGRGTIHRGVVVLDFDLVSGMGRKLPPAWEGVWTGVDVLQMLTIRIQKQDRCFMFGLNQGDIGLFEVTKNGQFDFDGYDDVPIDWTIETRSITFAEPSNKKRLVSAEQWYDQVMGNIESKVYFKANEGECWHPWAEIKDCAKYRNCEPGEISCPPAVINCQEVKYYQPPARSRIALPQPPDKCDVQTGGFTRDGYEFQLRYVNTGRFRLKRVAMVAQRLQEDIYGDLSRVACPLLSE*
Ga0114970_1000081417	F036666	N/A	VIWKPTQKLVFPSKQQLNPLKPMLNQGYQAVARAVERVKNTAQGVRILAEWLGDGGIPVDRSVAQHRLDTCLHCLHNKPTKPDAIEKTVGEVIIEQEQLRHDMAMILQGESNAGTCEVCGCYLKLKVWVPLSYLGDREMPDKCWISQERKAI*
Ga0114970_100008143	F054609	N/A	MNSLIQNAVARGWISFPHPAAVTSRMNSSAYNAQRAWKLWNEGQSLEYVAKAIGVKKRCVMAIIEEGKSKAKEVK*