Scaffold Ga0114970_10000307

Overview

Basic Information

• Taxon OID: 3300009163
• Scaffold ID: Ga0114970_10000307
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35732
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (27.66%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Associated Families: 13

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008936	Metagenome	325	Y
F024717	Metagenome	204	Y
F025680	Metagenome	200	N
F033329	Metagenome	177	N
F034061	Metagenome	175	N
F057894	Metagenome	135	N
F059603	Metagenome	133	N
F060610	Metagenome	132	Y
F065376	Metagenome	127	Y
F065768	Metagenome	127	N
F079784	Metagenome	115	N
F085061	Metagenome	111	Y
F100269	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114970_1000030718	F025680	AGGA	LGSKKTTHNLVEVFTHEGHTYYRFPKEVNLPLERFSMSMSLLERLSSGVSGAEMELILTEMEKALGAGLSNPKNAALIGAYIHVIRERQDTVIHRDILLNIAATWLVRDDEDPNIVNSDIHNYKLELFEQLSKGGAKDFFSGLGIDPLMPLLTMSPEDFQTLWEYNLVQQRNLKESLFRLNSHREQGRRKQATT*
Ga0114970_1000030720	F065768	GAG	MSVCSPCYDAGSYVNACLTEFSFGTLPADNTEYIVWLQHNATKKIMQFTATTDGDGYINIEGIQLDPLQGYTIWATIDGVEQDITVDGDTYKCLSFSAASVGQSPVVIP*
Ga0114970_1000030725	F057894	N/A	MAANRWRSGYMRIQDDTFTGYLTPIGSVQDVEVTFKVKAMQKIMEASEDIQMEVPNEYLIGSLRQNDEGYFTADVIIYNKVVRLKLTEDEIKRSKTLSL*
Ga0114970_1000030727	F059603	N/A	MTTEEKIIKTMNDYYPIEGKIVDGCVTYHSTQRTHESFRQHLMNANPDSIVYSYYLSRCARWIKILKLHNQKLIPIFEPNGTKD*
Ga0114970_1000030733	F033329	GAG	MSRDIYNSIEAINASSIKRHFTGSIQYAAGALERGAEFHRNLLETEPSAMPPNAKLIYDAIMKHPMLRLIFEKSAKEITFIKEIEIDGRKVAAKGILDLHCPMYSINADIKTTSCTNLRAFASDMTKHYNHIQAVWYSYLTGYSPTNFYYIGVPNKFKGELFIYRHTTEEIDTAENLIKEYLVHRGL*
Ga0114970_1000030736	F085061	N/A	MSPFDNIHYEFTQFNRYLDTIIDPREADDDSMQAKVKEAIIQAYSNGYHDGQKAIFDRLPKPMASGGDQGGREYYDAL*
Ga0114970_1000030737	F065376	N/A	MNAANIENISEFYKALNSTEVLRAQSMIEGAPQAIEDKLSYDMSAESIKAANDAIKQIEINRKLVTLPLDAYKKSLMDVERDATAPLKAYIDQRKAMMIDYSNELERKKAEADAKIAQEAADALKTADSSNVSDIFATFTDATTTTTLELDHTKNIRISKKAEIVGEVDWVTLLWTLMQAEMFDVAELLRKLPKAMEITNIAEIKGIEIVEHKTQAIR*
Ga0114970_1000030740	F100269	N/A	MASVRTETIYLIAIIVLVFLLLKSCGENVSNDYRLKHTIYEDSLLIASQKKIIAQSSSDAAKKAQQIAELEVKVKNASEVVKIETKTVIKTQIKLGDTVMIDKKPYIQLPKPFLKKTEWYTIGGMINRLGWLQIDSLVIPAKFTYAVGDTMRTGFVNRLLKKSDTVVRLRVDNPNMAITGMENIYIKQEKKWHQTTAFKLGVGMIIGVAVGVTAK*
Ga0114970_1000030743	F060610	N/A	MDDGIDSVQVITTLDEGCVVGIGCKVHTHHHRIEIKPQVIYQPLHNFTIFGKEYCTNQWGQTFEIAADEPMPLRPTMQHTYASDTIQPSNSAFLVKPKVEQKIIIKPRTEFRKYQPTMDAPVMGMLLTFTIYLTAQWAWSSMGAWSNLCSELKQCLRYSS*
Ga0114970_1000030744	F079784	N/A	MTRKVSKPRQVLDIILKYWRPTVGSLVILSSVFALIFKQITTETLAAIVAAMVAAGYIPKSNSNG*
Ga0114970_100003075	F024717	N/A	MATPKEISGRIDALFSEWSGGFTPLFFAVLDMRREMYIRIFGTGTSGGTNTAGQTLPTKPYTPAYAAIKAKNGRPPLELTGFLKRSFATDQGSVFNEGFGSAIYIQADESGKAAGLQKLYGPIFQPTAEEQAAMLQLHADLLVEQISNQISKP*
Ga0114970_100003076	F034061	N/A	MCYDSLLGLQGCDRPEPTTGLYIDDLGINQTLLGQLITDQYNSGVELFEAKRAFAWRKMSTDILSRLNPMMKADTVVESKRIGQVVSNAANIDTAVGAGKYTGIRVTIDPNTTSFLNFYLSSFKIDIYTMATPVEIFVYDMSTLKLIDSFFYQSEAVEQFIGKTFKANRRKLDLAFVYESLYDTTKMIPKKGSCTDCGGKLRAVHVCPFVDAIGIELTTDGFNVLSSKSKKYTQGMSLVYNVNCDREAWLCSIGGLMAMPLAYATAVEIYNYGLTISPNQRVNTTVSINTGFATSDPNDGMIAGRDIAATRYNEELSAMLQNMRLPDDNTCFDCRKNMKYVTALP*
Ga0114970_100003079	F008936	N/A	MASFDDLVKQKIKLLENVPEEIATAAERAQREAWRKIAPMLAEMDIDADGNIAQTEDNIRRIGGITEELNKVLAGGEYKGAIQSFLASIDEGVQLTDDIAKKIDNSFKPDNVQKQLLNISKQNAINAFFGSGLRERVTQPFLEQLTANVAARAPLREAVKALQGVIEGTDSTDGRLLANVRTTANTAQAIADRSYAAAVNEELGIEYFQYLGGEIPTTRSFCEHREGQIFHRKEIEAWGEGKNSGGINDIRNGTWDGRIEGTDSRSIFTFVGGWNCRHYLVPVIKQKVPATVQARAKSEGFT*