Scaffold Ga0075423_10163966

Overview

Basic Information

• Taxon OID: 3300009162
• Scaffold ID: Ga0075423_10163966
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2333
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013919	Metagenome / Metatranscriptome	267	Y
F081533	Metagenome	114	Y
F090028	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075423_101639661	F090028	N/A	MLWIRHSENSVMPVFGYFAIVGAALVALFFVADATLEKGASPVVTSERVGLPKPWQPDPIQTLVSKPAPEPDMTTPEVLAAQPKTAAEAPKKKHVTRKRSPDDHYQQNQAWSRDRDRGPFGFFFG
Ga0075423_101639664	F081533	N/A	LEAGQAVELCAGVVLPPGSYSGIKAWVREDALGGLISTPSRFRIELTAEQLVSMGAAVQPNQNSEEIDVTEFVRLGLLKPA*
Ga0075423_101639665	F013919	GAG	MMEGAMETVLWVIAAIIVLAVVYVCALSFRRRKEALGDEPSMSDVAPATKEHGIDLQARRKTYDDIT*