Scaffold Ga0114966_10309458

Overview

Basic Information

• Taxon OID: 3300009161
• Scaffold ID: Ga0114966_10309458
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 952
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002406	Metagenome	562	Y
F019834	Metagenome	227	N
F093841	Metagenome	106	Y
F103230	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114966_103094581	F103230	GGA	MIALISIFLLTALDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNIIEKNKF
Ga0114966_103094582	F093841	GAG	MPTLKIEKFIYMADGFYVYKMEEGYAVKDQFGYTLKTAKTVKTCENYVQLQLQTRRAAERYAIEKINQDKNQSRTV*
Ga0114966_103094583	F019834	GAGG	MKEFKFSITGTIFVPDNVEYEYDFENQIYSFKINDKTYSLLAGLEADDKEIIVTDENFKSHDIKPFEYEDAYFED*
Ga0114966_103094584	F002406	N/A	AMSDRLRDELSSEYDDETKDLIIRAFMRGLYQDPSIVEELKSSSLIESDYFEDAE*