Scaffold Ga0114966_10230422

Overview

Basic Information

• Taxon OID: 3300009161
• Scaffold ID: Ga0114966_10230422
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1155
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F012219	Metagenome / Metatranscriptome	282	Y
F050378	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114966_102304222	F050378	N/A	MSPEMWVQIGIQAFITTMSIGAAWVALQVRLTRLETQVAHIINTLDGQQQEVRRIEQRLGKLENKVSALEAIIQR*
Ga0114966_102304223	F001733	GGAGG	MNSISIKRLVVVVIVAFVAAFTSVFGDGVRTSEAHDIAELGAVLVLYGSKAVAAGVSAAVSSVLAFLTMPFSGVQANALKVGK*
Ga0114966_102304224	F012219	AGGTGG	MNFQNFRIEKEPAPSTDWRVFGDIYDNEGNLIGTFGVDGTGVNQWWVTQDEQFQSQIVEQFSLVMAQQIVSGAAE*