Scaffold Ga0114966_10122683

Overview

Basic Information

• Taxon OID: 3300009161
• Scaffold ID: Ga0114966_10122683
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1720
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017999	Metagenome	237	N
F024787	Metagenome	204	N
F071234	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114966_101226831	F024787	AGGA	MNSEIYGWLITITLFTLVALLIGVTWMVAVENGYDKGFKSGYKRGLQDAKQSSVKVEKFTVKTHPSMRQKMLEADNEYLMEKVVKLWDKEMQ*
Ga0114966_101226833	F071234	AGGAG	VGDMEMIDKHGVKATFTDRGVEIDLVRSHERCILCNDPRLLHEGMTKLCFSCGCRQ*
Ga0114966_101226834	F017999	N/A	MTFDYHKAMAEGHGYNNYVASLLRSYGVPNVDVPEFSIATTHDKIADKTKNEKDIIVDQLVLEVKSRAISFDGADDFPHALILVDTVYGYDQKIIKPFAYVYLSQISKGVFAIPVSTREFWTIATIYDHARQIEVECYFVSKRHCRPFIELVDILLERAHERAGEMQ*