Scaffold Ga0114966_10015021

Overview

Basic Information

• Taxon OID: 3300009161
• Scaffold ID: Ga0114966_10015021
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6013
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (90.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F014848	Metagenome / Metatranscriptome	259	Y
F019477	Metagenome / Metatranscriptome	229	Y
F022648	Metagenome / Metatranscriptome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114966_1001502110	F022648	AGGAG	MMKIVHNVQVHPVYAGHINDHKVIREEEFETREDALMWVESYNQHRDNWNINGWLETGNGFKAVYTGAIDDETGENL*
Ga0114966_1001502120	F014848	AGGAG	MTRYYETIAEFERDGYDIIVDKTYEDLSPRDCFDDSVTDIKQLCEDIDSGRYEWFMLRVRVLVEGLELAEEFLGGCLYSDPKEVLSDGTAEDLIDQAMTEAKGHVYRLSRKFTELSYAVDAEGINA*
Ga0114966_100150213	F000652	AGGA	MKKVIVETLLTQELEVPDEWDRLDVYDFLGEHQSFRTAFQGVSNEDQSARIIDLGVVTERVTEMGEEAFDE*
Ga0114966_100150217	F019477	AGGA	MGSWEFSEFRIGRLFHLNGCDYIKQSTRTARMLSNGRIFYFGKNEVIHAIAW*