Scaffold Ga0114966_10011518

Overview

Basic Information

• Taxon OID: 3300009161
• Scaffold ID: Ga0114966_10011518
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7013
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004760	Metagenome / Metatranscriptome	424	N
F010603	Metagenome / Metatranscriptome	301	Y
F012569	Metagenome / Metatranscriptome	279	N
F020886	Metagenome / Metatranscriptome	221	N
F041077	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114966_100115181	F041077	N/A	VDSNPDLKDSKSQLYKAVSEMLQNHAILRNYPAGIKDAVGIAKVKLQAETASELKKKVAEYESELAQLRKATTPGSGQPTGPAKTKAFHELSLDEQERELIKMAGEVDRNN*
Ga0114966_1001151813	F020886	GGAGG	VSLDEVADLRDRVSNVSERLVRMEERQMTLYSMIERSLAFHGDVANRLGALETLKTKVLAVAGVVGLACSMGWDVLKNRFNG*
Ga0114966_100115184	F004760	AGGA	MPIYEYEDTRNGKVVELEKTVAERDKVPRYLKRFTVPRKLTLVGVGEPLDNPLGVNETNLMKGYYRQEQKLGSGFKSKYTPDSIKRATLRRK*
Ga0114966_100115185	F010603	AGGAG	MATEFMRNTRKAKNKALRFDSASFANVFEITASSSGGTVNTVATSPASLNVTLNGTSYRIALHT*
Ga0114966_100115186	F012569	N/A	MSRALDKFQGQYGFSVGTSGTATAGYWAIQMLTDTTFSTIAGRFDGTLTGVTIGAGNIIYGEFNSYTAGTGSVIGYIAG*