Scaffold Ga0114966_10000046

Overview

Basic Information

• Taxon OID: 3300009161
• Scaffold ID: Ga0114966_10000046
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 103619
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (22.08%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046856	Metagenome	150	Y
F100358	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114966_1000004613	F100358	N/A	MPEQFGPSAGDTLFAMNRASYLRTAGAVGADDTKYNAIMNKKTKIYASTDSSSYIQSRRIHSIGYSSTHAPLGDTLTFKSPVLQVQKDAIRRCRSGGCVAPAKKGANHSFLSGR*
Ga0114966_100000462	F046856	N/A	MENVSNALTAIKDASVSGASTVGGFFTSTAESGVSTFKGSSLGESFFKNISMIIVVVFILLGGILYIEFASSSATSAAGVTGPKKEFVDRTVYIEPNTGLDDARTLPTDVPWTVPALSIRNELKEAFGSKYTEAELENIHTKCSDKFCVMNQKSPEDLEKACNSVTSRTMCGTKCCCGWTKYVGFEGDNDPTVVMNTAEANVADPSGASATVPGKCVAGNSKTPFDRVDNQNQARDIDYYYYLGQCVGGRGCMNKGAIRT*