Scaffold Ga0114966_10000025

Overview

Basic Information

• Taxon OID: 3300009161
• Scaffold ID: Ga0114966_10000025
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 124355
• Total Scaffold Genes: 115
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (9.57%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F004953	Metagenome / Metatranscriptome	417	Y
F006840	Metagenome / Metatranscriptome	363	Y
F010462	Metagenome / Metatranscriptome	303	Y
F023555	Metagenome / Metatranscriptome	209	Y
F025977	Metagenome / Metatranscriptome	199	Y
F028489	Metagenome / Metatranscriptome	191	Y
F032628	Metagenome / Metatranscriptome	179	Y
F048942	Metagenome / Metatranscriptome	147	Y
F076942	Metagenome / Metatranscriptome	117	Y
F098653	Metagenome / Metatranscriptome	103	N
F100847	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114966_1000002513	F100847	N/A	MAKYINIEGNQVIDLTPDYNRPLALVDITVLNKLTELLPKGDFNSIRHNFREQIMKTINLEELVQTSEDFITFHRSVNLIREICQGEIHEVDVDKLRRGIGKFEMEDL*
Ga0114966_1000002514	F032628	N/A	MKAIYSSNYLRKEGDQKGKTFHIYTIKGTVEELKAYMSTPQFKKYPRKSPTGEPQMHTMYMDALRDELPLYLKQDGNYTLDQSETRKDTARLEMLEQSSSALATAFANRLADKVFGAGKVSNANAFIQEPVATGADAALNDDM*
Ga0114966_1000002524	F098653	N/A	MDKNIIYSVLGFDLDAEITDNEGNVIASGTTCNYIPKETPHYSCNVDYYNKWTNFNTDLLSKIRDYKRRNT*
Ga0114966_1000002526	F010462	N/A	MLYQLPNGKVIHLSIEEYLDLTDEDIQYMMSLDFGEHIHNPFTGSAVDKNVKEKFYDFEFLAEDDEEINNIISDDIPFDDIIDLSDNTE*
Ga0114966_1000002527	F076942	GAG	MNSKVIVLAEETTGAVVNVSQNNSDFGYIRVQQVRTMIDDNGFLRRKPVSALIPGSVSELQETGFFAGQQLDGKIVVEESLEPFNDKTPERDLKIAGETGVVCTLGGLPIFRRTKFSFDSNGADTLIKHDNIQQLRAAYSAQNAKSAALEPNDDFSIGG*
Ga0114966_1000002528	F000716	N/A	MEKLKQDVSHYQLHAGKTYMQYEQDKYSIYQNYLYKRAIYGLGSLSEQELATICSKKKQRINNVYKRAQTVLNTLKQKLTIKYSNDIFQCLFPNSKMTQDILNYSDIDEKYKNTLTFKDLKVSKDDIIRIFIAEGILPKNFLSLENAPISLPSLKNESKA*
Ga0114966_1000002530	F028489	N/A	MKMIGKELKIKYTTSYSTFAVLPMNRGIDSKHVQKMIASLRIQGCLRVVICCKTNIIEGEWKTYIIDGQHMATALEREGQPIPYIEIGIDSEEDLIKKMAYLNNSSKSWDMMNFINAWKMIRPDYMKLFRWKNMYDIEVTMLAIIGVNNGAIRHSTGALKTGNFKITNPKAEDMCKAFNDIFLKIGKSDRAVKFQFLNAFLQAYTPKYDHTKTMVAIERHLKTVKLMAIGEETGAFIRKQIFKLPK*
Ga0114966_1000002544	F048942	N/A	MIKVKELKDDAIITIEVNKNFYLMTKAASFVILQGMDIPEKGDAYFKDIMSKEYNSLDEQQRAFYTIALLLAEIENQATKNKLYTEKEIPEPGEEGYVDPKLG*
Ga0114966_1000002546	F025977	N/A	MKEIFKKLADMGITPNAFYILDCVKEGIVPNTYVKASLEVTRLIRDNWLTQDLELTDKSVIFTTEIDGYFKRSKKKTSIDLLGHNFMQNIEAYVHIFPNKKLSSGKYARVPAKNLESGFRWFFETYDYDWETIFQATQKYVGEYESKNYEYMRTAQYFLRKQNVDKSWDSDLATYCEYLKDSPDDEQVYFSELIV*
Ga0114966_1000002548	F023555	N/A	MSSNLRKEKEREFYMQHMDAFKAIGIADPFFTIKTAFFKKGKFGRQCQFFEWELKKGEDIYMEFYDNAYDGNGKTIDIIPMNEDRSLFKLKYNPYFQEEYDVIEGVDSEGKPDRKYLIPVNEMMVVLSSGQEISHSLYEKRKEDAKNDLPELQKSLSLFPDFEKEYSPKVEEVFLNNEDESVSDILMRISVEFQKLAKKL*
Ga0114966_100000256	F006840	N/A	MKEFKLLRGRAILVEIPQKKESGIKLSEKDEEHIMAEAMKLWNKLTVYAVGDKVEDVKAGDQVYIRTSALNLEVVERVEVGGSVKFVLNEGDVVIVW*
Ga0114966_1000002562	F004953	N/A	MNKSMMLVQATWQESQTFRMIPTSTDCPYVECIFDPTSNVFVVISNIKKTTLHMLPKLDEYGQPLTGSKGMKQERHKLEVFQEFYVEDKKATEELIQAFAVNAESFDYKKFMKEAKKA*