Scaffold Ga0114981_10005611

Overview

Basic Information

• Taxon OID: 3300009160
• Scaffold ID: Ga0114981_10005611
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7756
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001459	Metagenome / Metatranscriptome	690	Y
F004760	Metagenome / Metatranscriptome	424	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114981_1000561111	F004760	AGAAG	MPVYQYEDTRNGKVVELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSQYTPDSIKRATLRRKKYGE*
Ga0114981_100056117	F001459	GGTGG	VRKLKAALAFIRDQEWVDEPKWEDEDEKAWTGFLSTPTGKRLSLILLNLTLRQNGNAVMKKSEALADACGYAKGFRGCVATLESLATQKLNSAIPGYGDGSDEPVAE*