Scaffold Ga0114978_10102809

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10102809
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1886
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014952	Metagenome / Metatranscriptome	258	Y
F017817	Metagenome / Metatranscriptome	238	N
F036206	Metagenome / Metatranscriptome	170	Y
F073250	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_101028091	F014952	AGG	MANNIPFQAQGKSTRINVTTTANTVSILSDSPCNQLRIHNGTAAEVFIRVGTESTDAAVIPVAGTPAYGLVLHNNQTIIITSPKQSANTAANSIYVSAIAPTGTG
Ga0114978_101028092	F036206	AGGAG	MGIIPKVKTTKVMAQVGTGITQDKLCPRGEFSPGKLPSGGFNPVWNFKNDQPNDYFTRKQSHTTGGGSKVY*
Ga0114978_101028093	F017817	GGA	MSRKKAEKGINPALEKAINELMAVVMLDPTASITDKMKVIDRALKLEALKMKDADEGYGAGLFGDDDEDT*
Ga0114978_101028094	F073250	AGGAG	MAKKESYVQKAAREGGENEVRASEDYNRMVRKEAKPTSKPAKRAIGRKLSK*