NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114978_10085995

Scaffold Ga0114978_10085995


Overview

Basic Information
Taxon OID3300009159 Open in IMG/M
Scaffold IDGa0114978_10085995 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2097
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051884Metagenome143N
F058143Metagenome / Metatranscriptome135N
F088307Metagenome / Metatranscriptome109N
F093863Metagenome / Metatranscriptome106N
F101131Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0114978_100859952F088307GAGGMDVEHYLDKGRQENEDILDKAAFKVSQILRIFVEEIDKTKFVYMYTLLYNQMGQGPDGKPCEEGDENMRHWLNTYNTHLEFCPADELVNKMHEIIGYLESFL*
Ga0114978_100859953F051884N/AMNSWSLLHDYMNETHDDAPWLDTTYDGFDEEQIKKVLKSQRQAQKLLDAAHRVADGEVPLGKLIHLGHKDPMSVSVRYEYGAILLALVEECAYKKDELYLVNVRDILDIIEVLNNGC*
Ga0114978_100859954F101131GGAMKKLCKDCKYYKKYYGYGGTTGSYDECTCPLTIKEKDMVRGVIHRSFCMYERLSHSGCGPDAKYFEQYEPPVPDKPWWTKNLEKLKNLLV*
Ga0114978_100859956F058143N/AMILERTADLQILTDDKQTYYRISYNDEFKYVSWFRREYSILYPVDAALYDTLTQKHFEVLND*
Ga0114978_100859957F093863GAGGMTNLINKLLAKFNLKLVCIKPDVSLVEASVKFLNENPKFVSDPVKPNNFYWGDINYVQKIVDGEFPQVSGKTYYKSQPSQYEKYFCDYDCDEKSLSKEDFKKIYDETTFTTEQLKNKLK*
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Institute for Fundamental Biomedical Research
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