NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114978_10028964

Scaffold Ga0114978_10028964


Overview

Basic Information
Taxon OID3300009159 Open in IMG/M
Scaffold IDGa0114978_10028964 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3975
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001059Metagenome / Metatranscriptome790Y
F001915Metagenome / Metatranscriptome617Y
F027490Metagenome / Metatranscriptome194Y
F098944Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0114978_100289643F001059AGGAMATYDIDSLKADLPTAKELAQFVYDKANVSLDLVGKNKEEQYTVAKNALEGKKIPSEYLTEENPYVDKKDQIPCDPVRKLPKRDVDLPDEDSLVHFFGATNMPHPLDPQSDKKVHINFKKYNNGVLTYQIMGPLEQIPVGTKVNKYGQTTPEKYTWLDPRTAELVMRRADGTLTEKGRGLYTFLVGEKGGGVWSLIDRDIVSISAKNIADPWA*
Ga0114978_100289644F027490GAGMSYGTVINGGAQMRKGVSKGINDKLATRSAEDDRREVVATAVNNAYKVNTVSSQHTNNVKNSGKFTKPSNTSKNYAL*
Ga0114978_100289646F098944AGGMFDEIRPEGSTVTSEEIKKKAREYAKARRAQSKAMKLATGQIEPKEAIETVAVVDEFDMSNFTPRSQVKAGRPKSIVNKVTEYGALFNKLNDERTSRGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDADEALNDFMESLRKV*
Ga0114978_100289647F001915AGGAMEWTLAHPLHDVDDIVNMADSVFGHEADGILTRDKAVFRKNVTIATTVQVFDKSKEFIAVCRGDKLVKTFIGDAAEDKLLAYCWFDRGGYTTYANEEISNAKFHHVDLKLSPRLRVKLINEMIDQHILWANRWGIPVVCSTSIRAEHDGFMKIHKKRGFTVHGSYAWLRTEKGIECLMK*
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