Scaffold Ga0114978_10027618

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10027618
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4088
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F034468	Metagenome	174	Y
F049483	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1002761814	F034468	AGGAG	MQQTYLYFTPEFVKEVLSWHEFHCIFELDAPDHIFTRLMAAEFYTTEDVRGREAEFKQCYTLSEIYCPHEGID
Ga0114978_100276183	F049483	AGGAG	MMKITITVPKHAVKSVKAYVKELNGKTPSTKVLEKFFEQDIEGFYGDTFEEGIEDAVESYFG*
Ga0114978_100276186	F000652	AGGA	MKKVIVRTELMQELEVPDDWEREHVLDFLGEFQSFRTAFQGVSNEDQSARIIDLSVVIETVEQLGEECFDE*