Scaffold Ga0114978_10025188

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10025188
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4313
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003065	Metagenome	509	Y
F009801	Metagenome	312	Y
F021263	Metagenome	219	Y
F022373	Metagenome	214	Y
F071972	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1002518810	F021263	AGGAGG	MTNEEREMDLVLGEIEVEVRRLKKVEQAALAVVKAFTNSIDYNTWDEALDKLEAVLKEKNNG*
Ga0114978_1002518812	F022373	GGAG	MQPKVTLEFYYPDDEDGLLFAIKGPEMYKALTNIKMAVTGSFHTKADLNAVLDRVQDLTDQIFEELGE*
Ga0114978_100251883	F009801	AGAAG	MTESKKEYCEFIGSKAFEDDGGWSYEVWTAAQQAVFKRLAARFAGYKDIDYTGHEIARYINFLAKQDVPE*
Ga0114978_100251887	F003065	AGGAG	MSEPSLNIWERALGWRKRQMIIKQLDPVTNQIRNNTLEEVAKEFEAMKNGGDTTASFAIYVRSMKK*
Ga0114978_100251888	F071972	AGGAG	MKPIAWYDPTNGMVSTDKDSPLFTPLGQVLPLYSQRTWVGLTKEERHEISMANKPYVADIMAAHEAKLKEKNT*