Scaffold Ga0114978_10009689

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10009689
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7466
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (65.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas → unclassified Pseudoalteromonas → Pseudoalteromonas sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036210	Metagenome / Metatranscriptome	170	Y
F053106	Metagenome / Metatranscriptome	141	Y
F060726	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000968914	F036210	GAGG	MKNKVLTEQNRTEFQRKYIDHILGSLNFMEIKDRLRDYLEVEKDHSSNGSLESEIRHEAPDVLVDNWEDMKGPATLTKGGR*
Ga0114978_1000968918	F060726	GAGG	MYRNVLLTDKEIALLKRIVGDTLHEKILPEAKNLTIIFNRLREIKPLVSNNQFFNYSK*
Ga0114978_100096892	F053106	GGAG	MAKYYVKSGTLEVILSQPNALEAAICGLLLTNKFDTIDEHFYVDEQGYRDYISATPKTNVIATKSIVRAAGWELSREDDE*