Scaffold Ga0114978_10009151

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10009151
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7707
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035768	Metagenome / Metatranscriptome	171	Y
F039639	Metagenome / Metatranscriptome	163	Y
F039640	Metagenome / Metatranscriptome	163	Y
F061859	Metagenome / Metatranscriptome	131	Y
F081346	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000915110	F081346	GGAG	MAKPDPNKPITHINPPTVVPTRVMPHKPGYADTVVVPETEANPDKPKKPRKPRK*
Ga0114978_1000915111	F061859	AGGAG	MTVEALLLIIGLCLFCIYFVFEYQRAATPPYQEPLKPEADMVDQWKAATKADTLDNLDNWNAKVGDKIWHKEAAAELEPTPLNPQAAWPFPTGRQP*
Ga0114978_1000915114	F039639	AGGTGG	MNIDREFIKWFYEDAYPEQGSNRRQVYSTTQNSQNIDVIDYWMREAFKAGAVAATNTYEVNALEQFEAFNINRNYPL*
Ga0114978_100091512	F039640	GGAG	MNIPDLINQSTRKDGTVDLLQYTNLVLSEACWLIKETPITAAFTTFDAAVAETQRADCFKKVYNLIIENIADAKPT*
Ga0114978_100091517	F035768	GGAG	MKITIEDRLLASYQAQKLRLRNREDEDYRAKIEDKAFEKIIVDRVRRNLRLDLDKGTNIDIEV*