Scaffold Ga0114978_10006276

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10006276
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9430
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (69.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007166	Metagenome / Metatranscriptome	356	Y
F010521	Metagenome	302	Y
F014955	Metagenome	258	Y
F017107	Metagenome	242	Y
F029048	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000627610	F014955	AGCAGG	MGNMDIEKYIVAATGLGYLVVGLAQYAKGSPSNAFIWLGYAAAQIGLWMNLK*
Ga0114978_1000627612	F017107	N/A	MTDYSENYLRIQKLLRCYYNATLKQDYDKATRIAHDLAEETIKLEFSTYAQVRKEWLT*
Ga0114978_1000627616	F010521	N/A	MKLSPAIIRNLYSAIYCMKPFCSYKNMPLPEEIEFIVDKGEDMGTYLYDPGSDDYEHTITISEVRCGTLDTVLKVLLHECIHMSRHKSSRWTHHDKEFRKRAHRIWSEIGFVDPLEL*
Ga0114978_100062763	F029048	N/A	MDMLSHIKDVIGDKAIISTEPFGVDEERQLIAFEVNDLAAVLRDVIQVCADCCVNTTDREAILELLN*
Ga0114978_100062766	F007166	N/A	MAFINKGNDMDEMHEVMNEMEERLEIALNNMEYGTDISADDIDVIRAACGKPNNKRNVLLQTVFNDFGNVFGGSK*