Scaffold Ga0114978_10005324

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10005324
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10292
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (82.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004431	Metagenome / Metatranscriptome	438	Y
F014142	Metagenome / Metatranscriptome	265	Y
F034472	Metagenome / Metatranscriptome	174	N
F080046	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_100053241	F034472	AGGA	MPNWVYNTLTIQGPKSEVDMIKDRLNKPFTLAQETFGMGDI
Ga0114978_1000532421	F080046	GAG	MSLSLANKIAKDKFFQPPSKYINHKVVEIVSLNEDSGIATVILEKYTIGRNANVYKNNNVFTIELPYSEFQNLNGWSE*
Ga0114978_1000532427	F004431	AGAAG	MTITYSLWDGAQLLGVDFKASSADEMNKTVSELQKVSKNVVAHMRKVEQN*
Ga0114978_1000532428	F014142	AGGA	MNSLNTLSVVVEPNHSMASSNTKSNELFRLANGNYISRMAYVHMVASEGLISHRYLTPNESKWVFANRVA*