Basic Information | |
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Taxon OID | 3300009159 Open in IMG/M |
Scaffold ID | Ga0114978_10005324 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10292 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (82.76%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004431 | Metagenome / Metatranscriptome | 438 | Y |
F014142 | Metagenome / Metatranscriptome | 265 | Y |
F034472 | Metagenome / Metatranscriptome | 174 | N |
F080046 | Metagenome / Metatranscriptome | 115 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114978_100053241 | F034472 | AGGA | MPNWVYNTLTIQGPKSEVDMIKDRLNKPFTLAQETFGMGDI |
Ga0114978_1000532421 | F080046 | GAG | MSLSLANKIAKDKFFQPPSKYINHKVVEIVSLNEDSGIATVILEKYTIGRNANVYKNNNVFTIELPYSEFQNLNGWSE* |
Ga0114978_1000532427 | F004431 | AGAAG | MTITYSLWDGAQLLGVDFKASSADEMNKTVSELQKVSKNVVAHMRKVEQN* |
Ga0114978_1000532428 | F014142 | AGGA | MNSLNTLSVVVEPNHSMASSNTKSNELFRLANGNYISRMAYVHMVASEGLISHRYLTPNESKWVFANRVA* |
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