Scaffold Ga0114978_10004593

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10004593
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11129
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003807	Metagenome	467	Y
F022658	Metagenome / Metatranscriptome	213	Y
F040626	Metagenome	161	Y
F058142	Metagenome / Metatranscriptome	135	Y
F058146	Metagenome	135	Y
F101171	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000459310	F058146	AGGA	MKLSSLTAKPQLIDVHIDDEETIKEFGEAIEFWTWDRQPMEVFMKLANATGNDTSGIISIVRTLILDDKGKEILKDDEMLPTHLLMKAIGKVTELLGK*
Ga0114978_1000459311	F003807	AGGA	MSEHDVWLKTNEEKLRSLIADEAKMMPMLDSMQATVKQLKAKQQFRLALLNQLLEAELEKE*
Ga0114978_1000459313	F058142	AGGAG	MAEVTYAVLNEPTVQQSQIVAVLRRDIPTSWNIPIYDDFPSDSEVVRYGIYVSDVHTVERNPHQLGIQYCGSVYHAYDEFGITYISYQDDPYNVAVNAIIANLVTAIKDDGVQLMDGYFERDFDQVRTYGPTQAEKHTWTFRLLRMEFNTPN*
Ga0114978_1000459314	F022658	N/A	SQEWLYKLEFGWWQKYCDTVLGAYYYANLPDGQLISSFNPSLLIKSDQTLIRLDTFGAILVFYESLVTDVSNMNEVDVQNYEFAKKRCEDEWTKALQLMNFYDLYMDSPQGPTTKLEENWTADVDYFNGDRRYF*
Ga0114978_100045935	F101171	AGGAG	MDNIPAVANNKPLVNNAEFVKLTIYNEYGNMANNNVYTFSSSYQSETIDGQVYTPLGGLLAVGVQQRDIRVTSADTTIALSGVSGNNIYVVLDNKIRGSKLEITRGFYDNNYNLTSNAHRFTGIVTNYQITEERQDQDDNYTVSLMASSFKSVLENRIAGRKTNSESWKEYNPTDTSMDRVPSLADRAFSFGQEPKQGATTQSQAKTDAGQVAQDTNEDTSYRVF*
Ga0114978_100045939	F040626	N/A	MALILTIDSLGKRYGMLPSEVLGRSNTFDLYIMDAALSFENFHHKKSMNNGMDPLPEYSPDELLAMFNKNKVQ*