Basic Information | |
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Taxon OID | 3300009159 Open in IMG/M |
Scaffold ID | Ga0114978_10002477 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15194 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (62.50%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001190 | Metagenome / Metatranscriptome | 753 | Y |
F002721 | Metagenome / Metatranscriptome | 534 | Y |
F018836 | Metagenome / Metatranscriptome | 233 | Y |
F043888 | Metagenome | 155 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114978_1000247710 | F001190 | N/A | MTGTGIAPNDDYFDITKFEELLNRLEGSKGRQQRQKSLESRRDIYAQGLASMMSNF* |
Ga0114978_1000247711 | F001190 | N/A | MTGTGIAPTDDYFDINKFEQLLQRLEGSKGRQQRQKSLESRRDIYAQGLAGMMGNF* |
Ga0114978_1000247712 | F018836 | GAG | MASSFADPSVPTGQSGEDDWFDLDKYRQAAGVAYEFSKKKMEEAGAQERETIGKGATESRTSAGQQQEFKQKDEERDYGQAQRAYRY* |
Ga0114978_100024773 | F002721 | GAG | MAQDARLDLGRYVSNPFNRQGQVSKKLDFHDLFASKPATGDYPWNPSRFSERDLMKRMMTRKETLNPALNFVGNAPFFDGNENGVTPEYELFEGLGRFNRPEDYDFDEGRGKTAQRPQEQPDFNPQWMEAYKLSPTINPGKMAKNPMPRLRNPDPQGYLMAMAEKRAENEVEDKPSISQLLDRQGLIKAQQAEAEEKQGEQTANINETETNVSPGKTIS* |
Ga0114978_100024779 | F043888 | N/A | MGGTKVNYTPPVIPKDDTFEKYLAYQQKKEESAAAQVAAEKAEQKAADEARKLAGATGYAGLRKGIEGQLRQGLIDYGEATQQLRDYSTKYDMTPPETDVSQLTDIYTKELLPGRRATGIGAAYEEILGRQATAEEQSKAMERFNQGYYTSNEDLRNSLYKGQEYNDKFNSSYLDNYYDTMFGKQTTDAAGKKTGQRTFKFSSNLLPQMAEGTEKRTGVVTPQFSDFTGTPSEIEEQQQNVRDSRQFLYSAGLTNLQGEIDKETQKLKNEGSKELAKVQSQGSIYNSLVGSFNF* |
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