Scaffold Ga0114978

Basic Information
Taxon OID	3300009159 Open in IMG/M
Scaffold ID	Ga0114978_10002477 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009159 Open in IMG/M

Scaffold ID

Ga0114978_10002477 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15194
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (62.50%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

15194

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (62.50%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001190	Metagenome / Metatranscriptome	753	Y
F002721	Metagenome / Metatranscriptome	534	Y
F018836	Metagenome / Metatranscriptome	233	Y
F043888	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000247710	F001190	N/A	MTGTGIAPNDDYFDITKFEELLNRLEGSKGRQQRQKSLESRRDIYAQGLASMMSNF*
Ga0114978_1000247711	F001190	N/A	MTGTGIAPTDDYFDINKFEQLLQRLEGSKGRQQRQKSLESRRDIYAQGLAGMMGNF*
Ga0114978_1000247712	F018836	GAG	MASSFADPSVPTGQSGEDDWFDLDKYRQAAGVAYEFSKKKMEEAGAQERETIGKGATESRTSAGQQQEFKQKDEERDYGQAQRAYRY*
Ga0114978_100024773	F002721	GAG	MAQDARLDLGRYVSNPFNRQGQVSKKLDFHDLFASKPATGDYPWNPSRFSERDLMKRMMTRKETLNPALNFVGNAPFFDGNENGVTPEYELFEGLGRFNRPEDYDFDEGRGKTAQRPQEQPDFNPQWMEAYKLSPTINPGKMAKNPMPRLRNPDPQGYLMAMAEKRAENEVEDKPSISQLLDRQGLIKAQQAEAEEKQGEQTANINETETNVSPGKTIS*
Ga0114978_100024779	F043888	N/A	MGGTKVNYTPPVIPKDDTFEKYLAYQQKKEESAAAQVAAEKAEQKAADEARKLAGATGYAGLRKGIEGQLRQGLIDYGEATQQLRDYSTKYDMTPPETDVSQLTDIYTKELLPGRRATGIGAAYEEILGRQATAEEQSKAMERFNQGYYTSNEDLRNSLYKGQEYNDKFNSSYLDNYYDTMFGKQTTDAAGKKTGQRTFKFSSNLLPQMAEGTEKRTGVVTPQFSDFTGTPSEIEEQQQNVRDSRQFLYSAGLTNLQGEIDKETQKLKNEGSKELAKVQSQGSIYNSLVGSFNF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114978_10002477

Overview

Ecosystem & Geography

Associated Families

Sequences