Scaffold Ga0114978_10000381

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10000381
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37002
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (35.48%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F002227	Metagenome	580	Y
F003748	Metagenome / Metatranscriptome	470	Y
F005388	Metagenome / Metatranscriptome	402	N
F005740	Metagenome / Metatranscriptome	391	N
F007361	Metagenome / Metatranscriptome	352	N
F012040	Metagenome / Metatranscriptome	284	N
F029798	Metagenome / Metatranscriptome	187	N
F094803	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_100003811	F005740	N/A	QACRRLLHKGLWAGAYGRFTINTVGGCITWPRQIETIEAVADCCGVGTVRNQWFEFQESGYGLLGENSACAGKQLVDRGTVVSYRDMSGGLNSYLRVYPGDASDVGKTITLQGVDQNGQWIRTLSGSVWIDGEKLTLALPYVQSTKKFTSLTGVIREATNTASRLYEYNATTLLELDVAVYDPDETLPQYRRSYLADRCSSDDSKPVTVMAKMRHVNATGVNDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVHTIRMVGVGLNGGGFSQWF*
Ga0114978_1000038125	F003748	N/A	MFKVNRQDGAAQFINTEGDFVVTVSKVEEALDNKGREVCKVTFKTDDGSSTSDRFINQENTWFRVNQLVAATNHNVPDGTEVDFLGKKGSFGEFIKAMTGLKLIIVARFEEYVDQAGEKKKIIRVKNMKAVAPVAAEDNLPY*
Ga0114978_100003813	F007361	N/A	MKGKLFQICGLPRFGSAFMSVLFSLENDCLGIHEQGATDPNWKQSIEDYRLIHKYVADCSTYGYLPKAVVNDSIKVYVKKDAESSSKECSERFGYEVHLQSFESIREYADQWACSNDVMVIEEGELFKLDTLRRIWVHCFKDERPFPEEKATRLLTMNIQRHEPEKVFSVENGNRFVKEVF*
Ga0114978_1000038131	F002227	N/A	MKLTIQSKENAQVIVDLFNAIITGNESEGATPLSIYDEDKHICSLVGKSGEQILELIIEREVGDKLQEVGHPAPSPKSL*
Ga0114978_1000038143	F094803	N/A	MFNDKGAKCSTWNKRLDGKEALRHKAMVNKEKWEQAKSLYLSGMEWKAIANDLQVSQATLQTKASREGITKLKSQMQIVCKEKKIESLESLSALVRSKLAADAITTIERVDTYDLDGIKDESTREQILGSVAKRSALVFGWSDQSEAASVSINLLGSMPDRLDNITLSNKTIEADTIE*
Ga0114978_1000038145	F005388	AGGA	MACPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTAAETWAAITLADGAGTNACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNIFAKYAIKAVADSSFTQVETIPSGVNEFPWIDGVSAGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRSDLNIADTGSGEGSTLLKRIGANRVIKNFRHVPNLFPPRFSYAGGKYTLIQPFTSASGTKGTVFSVNPSWTTASYEGAFIVTPYVFKSHIVRPVNRVGDLAWMPTNYMGEWQWVTGAYKLSVDCADPLDKKGQHYAEFVHAPEPIFTNQGMTIIFRRCTGALTTIICS*
Ga0114978_1000038148	F029798	N/A	MANISCADALTLINEAYGASCKSPRERILLELGLLWEAATLGGTADINADNTVIDSSSTMITADMTEFI*
Ga0114978_1000038151	F001272	N/A	MIKIELTTEQANALMQLVDIAIKAGGYQNAKVAVPIADIILEAAKQPEGTN*
Ga0114978_1000038156	F012040	GAG	LLELPDVNIADWITNGQQAELALIMRNPVLRMALRIVAESMPIAMPSHGSKESDIVFAAGITAGYAHCLENLRKLSVVDVTKELEATFDDKN*