Scaffold Ga0114978_10000052

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10000052
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 86892
• Total Scaffold Genes: 134
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 106 (79.10%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005167	Metagenome / Metatranscriptome	410	Y
F008023	Metagenome / Metatranscriptome	340	Y
F009327	Metagenome / Metatranscriptome	319	Y
F010448	Metagenome / Metatranscriptome	303	Y
F014843	Metagenome / Metatranscriptome	259	Y
F085115	Metagenome / Metatranscriptome	111	N
F086580	Metagenome / Metatranscriptome	110	Y
F089937	Metagenome / Metatranscriptome	108	N
F093225	Metagenome / Metatranscriptome	106	N
F102506	Metagenome / Metatranscriptome	101	N
F104430	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000005211	F086580	GGTGG	MTTQTKDSFYLERLKTKFNNKDGYWSVGDTSTSIWQPHTRNKFDVLTEQKLIDITFDEQTYKSFQLIIVGFNYEFRSVLDLNGNTTDNYLADNEIGGYANDVKSFVHYEGIAYEIGGVGDTRQNLNWLGELATLYIYGGDTDPNKVIKKCQKKLDLLSQIVDVRDELISISNERIGSYDTKNPYNINVGDQVFIQAHGRLRKGKIVSTTGSRFNVAYLTPSNHSDLKYKTLRLDCLWLPINP*
Ga0114978_10000052116	F089937	GGAGG	VATIASLADRLRSEIGDIPKSFVYQFTADGTTNRYLIPYSPLDGLNLIINLNGTDVSDDVEVEEATGYIVFDTVPAADAAIIVAGNYFRYFTTTEVQSYISTAFLEHSAFHTDAYGRSVSLQNMPALEEYPVVIYASTLALYALANDAAFDINVFAPDGVTIPRSERYQQLMQMIESRKQQYKELCSQLGIGLYKIDVFSFRRISKTTNHYVPIFQPQEIDDRSAATRVHLPTPTYGNVETPVSIVTQDLFVYEGDAYEFTIVLDFEVDTYTAKADILGVGIPGVITTFTITFPNVGTADGAGLRTLKLALTGTQTRMLPRTSYYDVQLTKDGVTQTYVRGKIFKTEEVTE*
Ga0114978_10000052117	F008023	AGGAG	VANTQTSPLDATGKAAEQAAKKNAEALKKRKEEISIATQLESESLEKDVFDPKKPDAPLVLDEIENVGVSTAGDMVVIRTITDIDDMSYGVGNTYTFKAGVKYRVPKSLADYLEQLGYIWRPN*
Ga0114978_10000052131	F093225	AGG	MTNNMIITVFATVGIITAALLGLRQLVEPYKKKADLFMSWFEDFKRDWSGEEESPGRDRVPGVMERLNRLDGELSSNGGSSTKDVVNKMYDNQGVLMEAFVEMGERLISIEEHLSVSKSKEPV*
Ga0114978_1000005225	F104430	AGG	MGEHSFVDRYIELDKQYIQHKQEQYKHYKEPNLPYTEKLFWDKLIHLGWRKDYTTTECLVLVCSVCEGAITKVVLKNNVNIRPLLNIEDKVEIHKTAYCKATAKQSKA*
Ga0114978_1000005228	F014843	AGCAGG	MLYYALNTNNRVAIMTSRKTEDAEHWLNSHGIINYDDLIDRSFYLEGEDLKKRQFVMSRSRAPIEMYVDSDPSMCAWVFEEQGIPAIMFMNPGYLAVERRPDAPKKVRTWNQIEESINRVNIARSKDAANPKELEFWDD*
Ga0114978_1000005235	F005167	AGGA	MAVNSSRSMNKSLDDGATDGKYRKVRPDTEVGPESSATEANRQSLHPFYGYGFATSEYPAKVNPGK*
Ga0114978_1000005266	F010448	GAG	MKNGDISNVSSPQVICVTDVVIPLVEEVTKKLLVTKVGLKLGEINLQGANKLWLLSNNYGISLELAGYADQGWTKELLEKAFEKLEREVVNPFNYWNLYEDPGELVRKLPYRANLRGVVDVQWRVARYGSAGIELDNL*
Ga0114978_1000005269	F102506	AGGAG	MAKKVVKTFSAHLNKNVEKGGAWMAIISVTTEGIDGTETLNMAAWSNASAGKRWVKSQVQALTPRKSVKMIAGEGKDAKGKPTSFVGVVTFRS*
Ga0114978_1000005293	F085115	GGTGG	MADKKKPEKPVTLAIGVPKKKAKVVHKVSKNKKGDVVVEHTNTNQGKWDKINLTKMGGSKTVKQGVKAVKSWHKSNPHRSQGR*
Ga0114978_1000005297	F009327	GGA	MRGSKVQGRFKIGFETLSMDEGMVDELRDPVGTIVDWWSWDDAALAADYANYVDPVYDVSNQDPTKGRRWNDPFDLPVILAQLMRGTNIMNERGFYVVDTLRLVVSVADINRLLPAMVTDPNQHIKDRVVFQDAVFVPTRVLPRGRYAERYSVVTIDCNLVNSEELVNDPQFQAYAN*