Scaffold Ga0114977_10077775

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10077775
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2028
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011292	Metagenome / Metatranscriptome	292	Y
F042869	Metagenome	157	Y
F057982	Metagenome	135	N
F064409	Metagenome	128	N
F093280	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_100777751	F042869	N/A	DTIKNWVPIGSLELKLAVAKAEGYAIRVDETRYHHVVDGTTVTSVDESKPKYYYYGPQQLLLSMFNPYRIAMEFYLKEKL*
Ga0114977_100777752	F011292	AGGAG	MTPKSFDIDTCKEVVGDARMRVIEAKARQDADNGVMDAPAMAKGTYWDGVYSYMEYVVYVTAYEKRLARIKRMKERA*
Ga0114977_100777754	F093280	AGGAG	MSPKIEALIKATGCADVGELFDRSIRLGSYLHQFKQEHGRPMTPTEWKYLEAVVHATPQERT*
Ga0114977_100777756	F057982	GGAG	MRYRITYSNGHYADWDSMQKELARAYKWGVFLYAIRLNIGAWRAGHKSFKYWLYVLRRKPKITQERT*
Ga0114977_100777758	F064409	AGGAG	MKLFKLKGISKKYALRAAQYRRVARGQAVAGLAFTEDALRELHDWESRGIGSVDKSRNGFAYGKWCVDLSVSMWVEDLMKGDFYKAEFLETRLQKLHNAKKLEAVIANPFFPHAIALEERA*