Scaffold Ga0114977_10051028

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10051028
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2560
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056336	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_100510282	F056336	N/A	VYEFPDGYSFVSLCLESTYNVVSIYIKPTLNSCPLDSAAKRPSHLDLKPTLKETVGMVQYWLDRARINEGPTDVTVVPVSFVTTELMDQLKRIVAPEDEIVDGEEAAKNDWVFELKPGDVFPVQIIASIQETLDASKFDGMMFPVVYRGSPVLEKRFYKRSGSENVQQANMPIFNLNPPPADSSV*