Scaffold Ga0114977_10045504

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10045504
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2726
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → unclassified Chlorobiota → Chlorobiota bacteirum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006935	Metagenome	361	Y
F017132	Metagenome	242	Y
F040624	Metagenome	161	N
F047676	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_100455044	F047676	N/A	MEIIITLIVLIIIFGIGFLVGAKQGTNQLVNQIKKDGGYFDMEYTSSVYPILYPTSSVNNDTMGTIGSKPKTQTDYQMEHKVEDETPAIDFMHNWIQEKSGKKPVSQKRKPKTTKEWEDEFDLGGHE*
Ga0114977_100455045	F040624	N/A	MKSEKHMALYKRKKELQEQIIYWEKFQGVNWLGKWGRSVRLEVLKEKFAKIEKQIAKLKDK*
Ga0114977_100455047	F006935	N/A	MNKRYAKQIIEWAEDAKQTLTIRKEIIIDENVTDAELGSIIRMMYKAKVETQNEQIKHATQKAEL*
Ga0114977_100455049	F017132	N/A	ELYEIVKKIPMQRFSTELAGETAEALKRYYGVEKILKFPQTQEYLFVNLIEELQIQTDDNKETSESNEPQSNG*