Scaffold Ga0114977_10014451

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10014451
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4983
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012455	Metagenome / Metatranscriptome	280	Y
F015434	Metagenome / Metatranscriptome	254	Y
F018352	Metagenome / Metatranscriptome	235	Y
F093770	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1001445112	F012455	N/A	MIKEIKNKIIRIQELRRSNAATAILNKKKYSRKIKHKNKLQ*
Ga0114977_1001445119	F015434	GGAGG	MESKYPNSWNRHTPKGMNLVDETNKSAKCCDTCECGQTEEQKFNKLME
Ga0114977_100144513	F018352	AGGA	MGKYKETITNILTCSYCYGQGWQFAGNEVDYDVWACECNPYNIPADEIQEYHQLFKTKENA*
Ga0114977_100144516	F093770	AGGAG	MITLKHSVNLITEIDEHKMPDHLLSTIVNLSEAQLELILRQTFTAALLGEGVLDKFNEGNSWATLKIGDN*