Basic Information | |
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Taxon OID | 3300009158 Open in IMG/M |
Scaffold ID | Ga0114977_10013646 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5134 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (21.43%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F027829 | Metagenome | 193 | N |
F035741 | Metagenome / Metatranscriptome | 171 | N |
F079522 | Metagenome | 115 | N |
F083794 | Metagenome | 112 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114977_1001364610 | F035741 | N/A | MNANDVIGKYLIAESNVPLFAFPGGSQIGMVNAGLVVGPVYSWIEKNNKLYWQFDYTIPGNAPGSYYAEHRPEFWKLSTTGSGGGAINLPTTSSLIPKWALPVALGALALFLFKNGSR* |
Ga0114977_1001364614 | F083794 | N/A | EGNTIVPKQQNKFTTPADIKKQADKINTYLKTAPNGTYVIEGRIGGTSKPTQIVIDKGEPAPAIAVNNSAPSRGISDPGAESVLSYRAALDMQNQIATLTAENNRLRDLVEALEGDLADIENAEPEQMAESPAMGALGQLAAILPAVVDKWFENQKENREIEKAKLYQAAQARQAQAQYQSNGSSDYDSL* |
Ga0114977_100136462 | F027829 | N/A | MAFTNRFEADISPKKTRIDPKAMQQTIDIPIGSNPDTGKTYSFRVYIAVSKMQKKLNYAPTILITITFFKYKLHLQSRDVKAIVSAFNKLSSFIDTASPNLENKLSQELLTYDQWEKEYFERKNMGIIDINREEYKK* |
Ga0114977_100136463 | F079522 | GGAG | MNQNVTYGKEREAIVPYDVAIWWHQAFDVEKSIFNPTYIPADLVEDIHQLQRRSIIKALPDSDPGRKWLILRFFPEGI* |
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