Scaffold Ga0114977_10010184

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10010184
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5957
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F003521	Metagenome / Metatranscriptome	481	Y
F005087	Metagenome / Metatranscriptome	412	Y
F011751	Metagenome / Metatranscriptome	287	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_100101841	F011751	N/A	KTLIQYSDDFNIQQLAGTCLKGQEFLDAKSVENFEFIDRKMINIDLALGFLSEENRLTRQQMILQAQQQFAQAMMQVPQEVPEMFIKVRRPFEDTLRVLGVKDVDAYLPTMDEAVKIIQAQSAKGPSADEQETQSKVALNNAKVQESGSVTALNMKKAEDIEMDNYFEGLAAKRGKLSAVQID*
Ga0114977_100101842	F003521	AGGA	MKSLVSNIRDYFNRRTKVIDTYKEANVNRKALVIENGESAKRLLRNDDFALLFNLYRFYLLEMLEESKDDVNRIDNAQRVAGVRDFIEFIERTEYLGKVANKNVETLTK*
Ga0114977_100101845	F000857	GGA	MEHGMELNLNNEEAKVNEDYYTGGVLSGGLEGALIKNDKMFNEVKSGTWSQTFNTPNMNYKVGAIDGERYVQYEQKNVESVRQYCKDRREFYKAIGTTDNPLFAGTFEAMNLPKCFAHEISGKWFNNRPWELIKTDKKDKILFYAIVNQFYSDFVCHPSGKIPLPYNPIVPTK*
Ga0114977_100101846	F005087	AGGA	MALFIQSGNALVSRVAQWVGAIPSSISINATAFNSSTSVITASASVDGIILVGDFIGTSTLKPYTAVLAVSGTSITVSDIEGIWAGTTYPTAILKLPTQSTSEILSCIQLCELKMRTIELPALRSDPYGATPSTLLTDSNGFATIPADMNKPILFFQETPNSAVPPGTPAASMGPWIIYDRVGDREIIRRRMIDQLYVRPFGVPRVIRASFSEVGNKYIFTPNPGENVSIKAYYQRTFPFLFGPTDDALNPIVQNNAALASFPEGYMYGTLWAYYDKNKNNEEAQKWSARYEDAYGLIEDQNFKGKWLGGDQHLTSEFQPRNYRYSFK*