Scaffold Ga0114977_10005171

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10005171
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8291
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038081	Metagenome	166	N
F046328	Metagenome / Metatranscriptome	151	N
F069688	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1000517111	F046328	N/A	MGLSTTDLGTGGGGQPKTISPGNHTLTINSIHLEDFQFIDGAKHLILNVETEPIEGFEGFMIDKDDESKGHHKGQIGRVKASQYAFADGETKSGIKIQRDRSIMIFLSNMSKTLEFYEWFVEQDNKFNTIEEFVKNFNANAPYKGIEIEFCIAGKEYMNKSGYINYDMWLPKAENKTYAYGENVMKYNEGKHLKKMEVKEVKNFGDDEDDFTTPTKGSSDFSLD*
Ga0114977_100051715	F038081	N/A	MNFNKEETKNLLNMLRSSDKENSIIALSCLDNFSKKEHLGELLVLYQFGMTPAEIWEKNCKKGFKHIKKVLPFKSSDYRLPSSKVFNELVNNNCSKQSIELYLELFTNEFSNHLYAMGYPTDKFDIQIKIKE*
Ga0114977_100051716	F069688	N/A	MEDVNNIFTVDTVIEEGSYIKVTGEYQIPDSSLFKRGDILTEDKYNGHQIYVAFATKDENGKNGLVLDNKSMHPSIEKSLDKIVQGLHLLKTKD*