NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114977_10004653

Scaffold Ga0114977_10004653


Overview

Basic Information
Taxon OID3300009158 Open in IMG/M
Scaffold IDGa0114977_10004653 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8756
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019449Metagenome / Metatranscriptome229Y
F026860Metagenome196Y
F074557Metagenome / Metatranscriptome119Y
F101160Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0114977_1000465312F026860GGAGMIKTAAIIERIMRELNNDQSIAPPPAGFFTVEQIRTELDMAHTRNASSRAYDLFRRGILERKAHKFKVATGQCHKAYVYKPIAPYQSIREASDGLFHYQADKVPNGWVRIVDYVFTHEISEAAVRSKVARASLKPKYWKTPRGIIGLHLNAFYKKSDLDRVMRKR*
Ga0114977_1000465313F074557N/AMTLILALSAALLVSEAIPEAVVQAVEQVESSGRGSKTPNGDGGKAIGCLQWHSAAWSDCSAVRLKAGLAVYPYSDAKAPIRAREYARTWLTVLKVRLSTQLGRQPFPGEVWLAWNLGWSGFKRYGFQWADVPPAKFAKARQVNTLAWGLLKEDQSAR*
Ga0114977_1000465315F101160AGGMTTPYNSHHSVNDMNDLIDKYVPVREAALQEHYMKAAETRALLKRLGCWPDKPSRSPETRGKKPKNGKLASEIGRDAYHWAYANKATYTEAAERFRVSSDAIHSYRQYRKLPKLRTL*
Ga0114977_100046535F019449N/AMTTETFTTLIVPGIASAAYLSASIACFCIGRPALAVMWACYSLANIMLLISVRK*
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Institute for Fundamental Biomedical Research
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