Scaffold Ga0114977_10002648

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10002648
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11502
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (42.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005584	Metagenome	395	Y
F006138	Metagenome / Metatranscriptome	380	Y
F019102	Metagenome	231	Y
F019290	Metagenome	230	Y
F025225	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1000264814	F005584	N/A	MSGTIDTIYFSTDLTYMIGDLWASVTGLGSSAVSASVTDLAIAQELDIGGDVIRITQSLVVKASAISAPVIGQLCSVSGVERMIAGFSKGTDDISYTIELADITT*
Ga0114977_100026485	F025225	N/A	MAEVINSKLGDVAVTAIGTTYSTTSAKIASELERIQTTTKMKKIYKPIGVDAKGKVRKRKIGQHLVKESKSVSYMGTYKLVNWLLKNRGLPPLGKTKLGLGGIGMGTKPGTIGALARRLVAGRKRSVNYIRNGWAAAAAVFGKRAGLVRGDYSKKAIERLGGGTKADAKKAKMEGVIFNRAGDKDIRFYPVRKNQVSGAAKIGGPGLLEAIDRVMKDMAVYLARKDKESSDKLGL*
Ga0114977_100026486	F019102	N/A	MSISLEEELNSTFVSPEREFMGEKLAPYTEGSRLLLLQVRDDNDSSVYFIWAFIYMHMQIAKNRKDAIKLAWNKDLFREKIIEYIEGKTEADRDAATKIVSAMVDEAQKGRVEVVQTHGLPDSGNA*
Ga0114977_100026487	F019290	N/A	MMEAFWGTTNIKVASAVAAFGGKLRTTDPVTTQVFEDGRRQITFWFQANGSGAMARDEMERSWAEMKSDSESAIRYVRAALENRETLLGLVKRTEPIRIIQRGNQTLLIPENAKPELKKAILKHL*
Ga0114977_100026488	F006138	AGGAG	MPAVTIGTSGLVWGCTAEAIGLVQSFSEARNISKSEITNNVGEIVGISYYNPTTAYSLSVAVTGAISVTAGGALAALANAATVGTTRIDSLTINKSPDAFVTLDISATGYPNVS*