Scaffold Ga0114977

Basic Information
Taxon OID	3300009158 Open in IMG/M
Scaffold ID	Ga0114977_10000482 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009158 Open in IMG/M

Scaffold ID

Ga0114977_10000482 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26770
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (10.20%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

26770

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (10.20%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025744	Metagenome	200	Y
F032657	Metagenome	179	Y
F034181	Metagenome	175	Y
F037724	Metagenome / Metatranscriptome	167	Y
F051915	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_100004822	F037724	N/A	MNPKEALQQIRALFEDMPQVAQPQAPVEPAEPAVTKVEMAEYSLADGSKVMISALEVGGKVEMADGTPAPQGEHKLMDGTSIQVDETGTIIEIASPKEDIMPEEPVAPAAAIAPAQDTTAMVAELKADFAEQKSQLETKIAELESKVKQGFAQVAELVEALSNTPTAEPTQKAANAFQSYVSTNDTKYDRLEKYRNAILNK*
Ga0114977_1000048224	F034181	AGGA	MNAVIFLNYKNYSVKTLGINLSNAGLDVEQVVIVKEKGIANAINVGLNKIDFSNIQYVTLLSNDILEPDNWLKVRNIFMQDKSVGICAIPLVGGFDDTTDIIGNFTISKEVIKNVGAFNTALDPYGAIDLDYCTRVRAAGLYTKYIHLGWATHIEQNGIDAYGYNKNELVKSTWELHTSNVANYSNGSKTYYLPL*
Ga0114977_1000048230	F032657	AGG	MTIIEDFIRSSYPLYTIQEFRIAFKMAVQGKLDCITEHYEKFSPKFIGQIMVAYTKKANEVRRIAKPKINQLEPPKLTDEEIILFTQKEWQDSSKSDYNRVFNADRVFDILLKQGKLIFEPKEMQKIVRIVREDNAQRLKKMYGTDAKEFNKKIKDNDFVDTQCKKLALVKYFENLSS*
Ga0114977_1000048247	F051915	N/A	MKFLNSIYGSWIKIFLSAILTMVMAKGDIYLVTLKECISAGIISILPIIINYINPHDKRYGK*
Ga0114977_1000048249	F025744	N/A	VKSYHESYQAQVEELRLDNASTDDKDILLLDEKGGYKFTKESIKKLTAQVKELGEKEFEFTPIEVVNSSGLKEFTFLQDWTTGIAFITEEEEEL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114977_10000482

Overview

Ecosystem & Geography

Associated Families

Sequences