Scaffold Ga0114977_10000360

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10000360
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31005
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (78.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006261	Metagenome / Metatranscriptome	377	Y
F054812	Metagenome / Metatranscriptome	139	Y
F068570	Metagenome	124	N
F103142	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_100003601	F068570	N/A	TGSSSKVQRVRGVSAAPAVNPKINQDEFVSALDELVGVWKVQDGCSVRRITNELPEPARTKFKEALMNEKINSARLVELLATFDIAVGSDVMRRHRRRLFGKDGCKCPIES*
Ga0114977_1000036010	F006261	GAGG	MAVLSSGYTTTEPIQIANAGVWSFTAVQSPTIRVTQLRVQQPLNSSVVESYGVFKPLGASKTVVVATSIYGIDGSYEFTTQGETEWAALYPVLTYQGILHVHDPLGRQKYVRFVDRTWTEVGDINNLIRNAKVNYFEVEAP*
Ga0114977_1000036037	F054812	GGAG	MDTNEVNQKFDDIIQPKVINQIVKQRREPAKFPELRYLWGITGLATFALLMLAAIVSTFLEGL*
Ga0114977_1000036047	F103142	GGAGG	MSLDYKGFEWGNRITSDEDSVDRFLHEGLVPESPSIGDLHGAAEWLATYAAETAEDAQGWANVVAFLILTAESKQKRSAVAQAKREFAKEKGIPVSQVRINRNY*