Scaffold Ga0114968_10255202

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10255202
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 995
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022649	Metagenome	213	Y
F048309	Metagenome / Metatranscriptome	148	Y
F048996	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_102552021	F022649	N/A	WQNQYNMLHIKNPNDIKGMNFVNHRYTLLSVEIYYEKYRFAFKEISNWVYIDVYRYPKWDSEQNVNMYRVDNGKFDNHWISAKYFGIIRNMKFTFTQALKDL*
Ga0114968_102552022	F048309	N/A	MLTIKNIDKVINMTCYGRDIYHVRTTTNTIGEHAYVFEFDLIDGSGVGGWGTPKEVHLIRNEYNGTYRLFCMGLQVATERRIEISEVKCLTSLLVEISEVLRKTKYWWEHSNLQNK*
Ga0114968_102552023	F048996	N/A	MLIINNIEKLNNKTIGAWRVAGVEIDYQRTSLSPDRSYTIRLSRSGAAVGAAIIIEREAGQFGYNVSVCYEDYDNVISINAVGEKELKNKDVFLSLMRGILDAEYNKIK*