Basic Information | |
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Taxon OID | 3300009155 Open in IMG/M |
Scaffold ID | Ga0114968_10108343 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1690 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 3 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000332 | Metagenome / Metatranscriptome | 1283 | Y |
F001538 | Metagenome / Metatranscriptome | 674 | Y |
F012435 | Metagenome / Metatranscriptome | 280 | Y |
F034828 | Metagenome / Metatranscriptome | 173 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114968_101083431 | F034828 | GGA | MVTKKPPAKVAPVKRRTPKPKAEQTINVSVAAPIAAKQEAKKDDSALGKVIGLIEWVDNPFKLFTVILLSFLAFAGYFAWDSRQVILHAITTQDKMPQLAKQENLLAPARSLMKDVDGIVVLVHKANLSTNSRTTVLALNADGSREKAIEGSITSLFNASSDRNSAMVAMLNGEVMCEEFNPSSKVGEW |
Ga0114968_101083432 | F001538 | GAG | MIDTIKLFPTVQPSGYPDKHDLAQKKLERQHEVNKANELAKQKQVQLQDIGFEIYCKKSLQERLRMEIFNNRKLDIYV* |
Ga0114968_101083433 | F000332 | N/A | MRWLILLLLLGLVGAVAKNGCHVREFYGIGYTVHDPTQRHKEMMAWLVQNAEHCKSTDYVVIWNNLAEWSGTADSVWLRNAVIHGYKEAQEREKK* |
Ga0114968_101083434 | F012435 | N/A | MVEIDLVKYGVLWQKVESMESKIDKMEAQLDTLIELANKGRGGFWMGMALVSGISSIFGYISHYWSK* |
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