Scaffold Ga0114968_10029294

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10029294
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3709
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050988	Metagenome	144	Y
F093507	Metagenome	106	N
F098909	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_100292944	F098909	N/A	VKTTITITPAYLPRIRDGAELTNIIHESAYDAFNMHNVNFDLAVVHTLIAKITTALADECDTGTTAQGDVYHLVPVTTYIPIEKAVAA*
Ga0114968_100292945	F093507	AGCAG	MKRSDLIHQPDIWPLIAAKIPEVVDGIGEMIEAVTRRRDFNEQIEAKYRAGEVEHERDWLKWNDPHRFIVEAAEELHDLIVYQAMLLVWLDAELSDTPPSVTL*
Ga0114968_100292946	F050988	N/A	MTRDISDEHAAYRAALEQIARYKHTPRAYRHQKFEQLVKIAQDALTTTTDAT*