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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009155 Open in IMG/M |
| Scaffold ID | Ga0114968_10017543 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4979 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (78.95%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 3 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006842 | Metagenome | 363 | Y |
| F011756 | Metagenome / Metatranscriptome | 287 | Y |
| F017469 | Metagenome / Metatranscriptome | 240 | Y |
| F027758 | Metagenome | 193 | Y |
| F034906 | Metagenome | 173 | Y |
| F036551 | Metagenome | 169 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114968_1001754310 | F006842 | AGGAGG | MKATPVMCGDHLVPISECDCLSYMREIESSAKRLIQLAKERESLK* |
| Ga0114968_1001754316 | F027758 | GGA | MFIDLILISFWVFGLFAVAGGLVWLLDRLASFHLAGMERVRKLQAREREGAR* |
| Ga0114968_100175432 | F034906 | GGAG | MSKLEKRLQSAADQAVRQRNYQRARQRAFTRLANTYPEVYRSFLEEEKEADEKMGKKWLDLDGNTSLIDTRSR* |
| Ga0114968_100175434 | F011756 | GAG | VSEPRYLSGDEYAHTGGYEELINCKECAVEFDRTEYQSDTCSECEDKRVAREKESK* |
| Ga0114968_100175437 | F017469 | AGGGGG | MNLCQFCGWEIARPEWYNSYNGGYACDDCLMDKDIEHYKEREGASR* |
| Ga0114968_100175438 | F036551 | AGGAG | MNEILETLLNNEIRICELCGSNEWRILHAGDESNCECEGECLRVCDSTLLSDDGCDGVAILVSKGVSV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |